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18 #ifndef __elxStatisticalShapePenalty_H__
19 #define __elxStatisticalShapePenalty_H__
24 #include <vnl/vnl_matrix.h>
25 #include <vnl/vnl_vector.h>
26 #include <vcl_iostream.h>
58 template<
class TElastix >
61 typename MetricBase< TElastix >::FixedPointSetType,
62 typename MetricBase< TElastix >::MovingPointSetType >,
140 FixedImageType::ImageDimension );
144 MovingImageType::ImageDimension );
167 const std::string & landmarkFileName,
168 typename PointSetType::Pointer & pointSet,
169 const typename ImageType::ConstPointer image );
172 const std::string & ShapeFileName,
173 typename PointSetType::Pointer & pointSet,
174 const typename ImageType::ConstPointer image );
197 #ifndef ITK_MANUAL_INSTANTIATION
198 #include "elxStatisticalShapePenalty.hxx"
201 #endif // end #ifndef __elxStatisticalShapePenalty_H__
Superclass1::TransformPointer TransformPointer
Superclass1::OutputPointType OutputPointType
Superclass::TransformParametersType TransformParametersType
Superclass2::FixedImageType FixedImageType
elxClassNameMacro("StatisticalShapePenalty")
SpatialObject< itkGetStaticConstMacro(MovingPointSetDimension) > MovingImageMaskType
An metric based on the itk::StatisticalShapePointPenalty.
itk::SingleValuedCostFunction ITKBaseType
Superclass2::ConfigurationPointer ConfigurationPointer
Superclass::RegistrationPointer RegistrationPointer
Superclass1::InputPointType InputPointType
Computes the Mahalanobis distance between the transformed shape and a mean shape. A model mean and co...
virtual ~StatisticalShapePenalty()
This class is the elastix base class for all Metrics.
Superclass::TransformJacobianType TransformJacobianType
Superclass2::MovingImageType MovingImageType
Superclass::MovingPointSetConstPointer MovingPointSetConstPointer
Superclass::InputPointType InputPointType
virtual void Initialize(void)
Superclass1::MovingPointSetConstPointer MovingPointSetConstPointer
StatisticalShapePenalty()
FixedPointSetType PointSetType
Superclass1::FixedPointSetType FixedPointSetType
itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > MovingPointSetType
Superclass::MeasureType MeasureType
Superclass::FixedPointSetType FixedPointSetType
Superclass2::ConfigurationType ConfigurationType
Superclass1::FixedImageMaskType FixedImageMaskType
SpatialObject< itkGetStaticConstMacro(FixedPointSetDimension) > FixedImageMaskType
void operator=(const Self &)
unsigned int ReadShape(const std::string &ShapeFileName, typename PointSetType::Pointer &pointSet, const typename ImageType::ConstPointer image)
unsigned int ReadLandmarks(const std::string &landmarkFileName, typename PointSetType::Pointer &pointSet, const typename ImageType::ConstPointer image)
Superclass2::ITKBaseType ITKBaseType
Superclass2::ElastixPointer ElastixPointer
Superclass2::RegistrationType RegistrationType
Superclass1::TransformParametersType TransformParametersType
vnl_vector< CoordRepType > VnlVectorType
itkStaticConstMacro(FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
MovingImageMaskType::Pointer MovingImageMaskPointer
Superclass::OutputPointType OutputPointType
Superclass::TransformPointer TransformPointer
Superclass::ConfigurationPointer ConfigurationPointer
Superclass::FixedPointSetConstPointer FixedPointSetConstPointer
itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension) > CombinationTransformType
virtual void BeforeRegistration(void)
OutputPointType::CoordRepType CoordRepType
Superclass::ParametersType ParametersType
itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > FixedPointSetType
Superclass1::CoordinateRepresentationType CoordinateRepresentationType
Superclass::ConfigurationType ConfigurationType
virtual void BeforeEachResolution(void)
Superclass1::FixedImageMaskPointer FixedImageMaskPointer
Superclass1::DerivativeType DerivativeType
SmartPointer< Self > Pointer
Superclass1::FixedPointSetConstPointer FixedPointSetConstPointer
StatisticalShapePenalty(const Self &)
Superclass1::ParametersType ParametersType
Superclass::DerivativeType DerivativeType
Superclass::TransformType TransformType
Superclass1::MovingPointSetType MovingPointSetType
Superclass::ElastixPointer ElastixPointer
Superclass1::MovingImageMaskPointer MovingImageMaskPointer
StatisticalShapePointPenalty< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetType > Superclass1
StatisticalShapePenalty Self
CombinationTransformType::InitialTransformType InitialTransformType
Superclass2::RegistrationPointer RegistrationPointer
Superclass2::ElastixType ElastixType
ElastixType::FixedImageType FixedImageType
FixedImageMaskType::Pointer FixedImageMaskPointer
SmartPointer< const Self > ConstPointer
ElastixType::MovingImageType MovingImageType
Superclass1::MovingImageMaskType MovingImageMaskType
Superclass::ElastixType ElastixType
itkStaticConstMacro(MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
Superclass::ParametersValueType CoordinateRepresentationType
Superclass1::MeasureType MeasureType
MetricBase< TElastix > Superclass2
virtual void SelectNewSamples(void)
Superclass1::TransformJacobianType TransformJacobianType
Superclass1::TransformType TransformType
Superclass::RegistrationType RegistrationType
Superclass::MovingPointSetType MovingPointSetType
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