go home Home | Main Page | Modules | Namespace List | Class Hierarchy | Alphabetical List | Data Structures | File List | Namespace Members | Data Fields | Globals | Related Pages
elxAffineLogStackTransform.h
Go to the documentation of this file.
1 /*=========================================================================
2  *
3  * Copyright UMC Utrecht and contributors
4  *
5  * Licensed under the Apache License, Version 2.0 (the "License");
6  * you may not use this file except in compliance with the License.
7  * You may obtain a copy of the License at
8  *
9  * http://www.apache.org/licenses/LICENSE-2.0.txt
10  *
11  * Unless required by applicable law or agreed to in writing, software
12  * distributed under the License is distributed on an "AS IS" BASIS,
13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the License for the specific language governing permissions and
15  * limitations under the License.
16  *
17  *=========================================================================*/
18 
19 #ifndef ELXAFFINELOGSTACKTRANSFORM_H
20 #define ELXAFFINELOGSTACKTRANSFORM_H
21 
24 #include "itkStackTransform.h"
25 #include "../AffineLogTransform/itkAffineLogTransform.h"
26 
27 #include "elxIncludes.h"
28 
29 namespace elastix
30 {
31 
40 template< class TElastix >
43  typename elx::TransformBase< TElastix >::CoordRepType,
44  elx::TransformBase< TElastix >::FixedImageDimension >,
45  public elx::TransformBase< TElastix >
46 {
47 public:
48 
55  typedef itk::SmartPointer< Self > Pointer;
56  typedef itk::SmartPointer< const Self > ConstPointer;
57 
59  itkNewMacro( Self );
60 
63 
68  elxClassNameMacro( "AffineLogStackTransform" );
69 
71  itkStaticConstMacro( SpaceDimension, unsigned int, Superclass2::FixedImageDimension );
72  itkStaticConstMacro( ReducedSpaceDimension, unsigned int, Superclass2::FixedImageDimension - 1 );
73 
75  itkGetStaticConstMacro( SpaceDimension ) > AffineLogTransformType;
78 
81  itkGetStaticConstMacro( ReducedSpaceDimension ) > ReducedDimensionAffineLogTransformBaseType;
83 
86 
88  typedef itk::StackTransform<
90  itkGetStaticConstMacro( SpaceDimension ),
91  itkGetStaticConstMacro( SpaceDimension ) > AffineLogStackTransformType;
93 
97 
110 
112  typedef float PixelType;
113  typedef itk::Image< PixelType,
114  itkGetStaticConstMacro( ReducedSpaceDimension ) > ReducedDimensionImageType;
115  typedef itk::ImageRegion<
116  itkGetStaticConstMacro( ReducedSpaceDimension ) > ReducedDimensionRegionType;
117  typedef typename ReducedDimensionImageType::PointType ReducedDimensionPointType;
118  typedef typename ReducedDimensionImageType::SizeType ReducedDimensionSizeType;
119  typedef typename ReducedDimensionRegionType::IndexType ReducedDimensionIndexType;
120  typedef typename ReducedDimensionImageType::SpacingType ReducedDimensionSpacingType;
121  typedef typename ReducedDimensionImageType::DirectionType ReducedDimensionDirectionType;
122  typedef typename ReducedDimensionImageType::PointType ReducedDimensionOriginType;
123 
126 
128  typedef typename FixedImageType::IndexType IndexType;
129  typedef typename FixedImageType::SizeType SizeType;
130  typedef typename FixedImageType::PointType PointType;
131  typedef typename FixedImageType::SpacingType SpacingType;
132  typedef typename FixedImageType::RegionType RegionType;
133  typedef typename FixedImageType::DirectionType DirectionType;
134  typedef typename itk::ContinuousIndex< CoordRepType, ReducedSpaceDimension > ReducedDimensionContinuousIndexType;
135  typedef typename itk::ContinuousIndex< CoordRepType, SpaceDimension > ContinuousIndexType;
136 
139  virtual int BeforeAll( void );
140 
146  virtual void BeforeRegistration( void );
147 
149  virtual void InitializeTransform( void );
150 
158  virtual void SetScales( void );
159 
161  virtual void ReadFromFile( void );
162 
164  virtual void WriteToFile( const ParametersType & param ) const;
165 
166 protected:
167 
170 
173 
179  virtual bool ReadCenterOfRotationIndex( ReducedDimensionInputPointType & rotationPoint ) const;
180 
186  virtual bool ReadCenterOfRotationPoint( ReducedDimensionInputPointType & rotationPoint ) const;
187 
188 private:
189 
191  AffineLogStackTransform( const Self & ); // purposely not implemented
192  void operator=( const Self & ); // purposely not implemented
193 
196 
199 
203 
206 
207 };
208 
209 } // end namespace elastix
210 
211 #ifndef ITK_MANUAL_INSTANTIATION
212 #include "elxAffineLogStackTransform.hxx"
213 #endif
214 
215 #endif // ELXAFFINELOGSTACKTRANSFORM_H
elastix::AffineLogStackTransform::ReducedDimensionSpacingType
ReducedDimensionImageType::SpacingType ReducedDimensionSpacingType
Definition: elxAffineLogStackTransform.h:120
elastix::AffineLogStackTransform::ReadCenterOfRotationPoint
virtual bool ReadCenterOfRotationPoint(ReducedDimensionInputPointType &rotationPoint) const
elastix::AffineLogStackTransform::m_StackSpacing
double m_StackSpacing
Definition: elxAffineLogStackTransform.h:202
elastix::AffineLogStackTransform::ReadFromFile
virtual void ReadFromFile(void)
elastix::AffineLogStackTransform::SetScales
virtual void SetScales(void)
itkStackTransform.h
elastix::AffineLogStackTransform::ReadCenterOfRotationIndex
virtual bool ReadCenterOfRotationIndex(ReducedDimensionInputPointType &rotationPoint) const
elastix::AffineLogStackTransform::ReducedDimensionImageType
itk::Image< PixelType, itkGetStaticConstMacro(ReducedSpaceDimension) > ReducedDimensionImageType
Definition: elxAffineLogStackTransform.h:114
elastix::AffineLogStackTransform::itkStaticConstMacro
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
elastix::AffineLogStackTransform::MovingImageType
Superclass2::MovingImageType MovingImageType
Definition: elxAffineLogStackTransform.h:107
elastix::AffineLogStackTransform::~AffineLogStackTransform
virtual ~AffineLogStackTransform()
Definition: elxAffineLogStackTransform.h:172
elastix::AffineLogStackTransform::itkStaticConstMacro
itkStaticConstMacro(ReducedSpaceDimension, unsigned int, Superclass2::FixedImageDimension - 1)
elastix::TransformBase::FixedImageType
ElastixType::FixedImageType FixedImageType
Definition: elxTransformBase.h:157
elastix::AffineLogStackTransform::PointType
FixedImageType::PointType PointType
Definition: elxAffineLogStackTransform.h:130
elastix::AffineLogStackTransform::BeforeAll
virtual int BeforeAll(void)
SmartPointer< Self >
elastix::TransformBase::CoordRepType
ElastixType::CoordRepType CoordRepType
Definition: elxTransformBase.h:156
elastix::TransformBase::RegistrationPointer
Superclass::RegistrationPointer RegistrationPointer
Definition: elxTransformBase.h:153
elastix::AffineLogStackTransform::FixedImageType
Superclass2::FixedImageType FixedImageType
Definition: elxAffineLogStackTransform.h:106
itkAdvancedCombinationTransform.h
elastix::AffineLogStackTransform::AffineLogTransformPointer
AffineLogTransformType::Pointer AffineLogTransformPointer
Definition: elxAffineLogStackTransform.h:76
elastix::AffineLogStackTransform::AffineLogStackTransform
AffineLogStackTransform()
elastix::AffineLogStackTransform::operator=
void operator=(const Self &)
elastix::AffineLogStackTransform::ScalesType
Superclass2::ScalesType ScalesType
Definition: elxAffineLogStackTransform.h:125
elastix::AffineLogStackTransform::ReducedDimensionSizeType
ReducedDimensionImageType::SizeType ReducedDimensionSizeType
Definition: elxAffineLogStackTransform.h:118
elastix::AffineLogStackTransform::AffineLogTransformType
itk::AffineLogTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension) > AffineLogTransformType
Definition: elxAffineLogStackTransform.h:75
elastix::AffineLogStackTransform::PixelType
float PixelType
Definition: elxAffineLogStackTransform.h:112
elastix::AffineLogStackTransform::ParametersType
Superclass1::ParametersType ParametersType
Definition: elxAffineLogStackTransform.h:95
elastix::AffineLogStackTransform::m_StackOrigin
double m_StackOrigin
Definition: elxAffineLogStackTransform.h:202
elastix::AffineLogStackTransform::IndexType
FixedImageType::IndexType IndexType
Definition: elxAffineLogStackTransform.h:128
itk::AdvancedCombinationTransform::ParametersType
Superclass::ParametersType ParametersType
Definition: itkAdvancedCombinationTransform.h:79
itk::AdvancedCombinationTransform
This class combines two transforms: an 'initial transform' with a 'current transform'.
Definition: itkAdvancedCombinationTransform.h:58
elastix::AffineLogStackTransform::ConfigurationType
Superclass2::ConfigurationType ConfigurationType
Definition: elxAffineLogStackTransform.h:101
elastix::TransformBase::MovingImageType
ElastixType::MovingImageType MovingImageType
Definition: elxTransformBase.h:158
elastix::AffineLogStackTransform::RegionType
FixedImageType::RegionType RegionType
Definition: elxAffineLogStackTransform.h:132
itk::AffineLogTransform::OutputVectorType
Superclass::OutputVectorType OutputVectorType
Definition: itkAffineLogTransform.h:61
elastix::AffineLogStackTransform::ConstPointer
itk::SmartPointer< const Self > ConstPointer
Definition: elxAffineLogStackTransform.h:56
elastix::TransformBase::ElastixType
Superclass::ElastixType ElastixType
Definition: elxTransformBase.h:141
elastix::AffineLogStackTransform::ITKBaseType
Superclass2::ITKBaseType ITKBaseType
Definition: elxAffineLogStackTransform.h:108
elastix::AffineLogStackTransform::m_AffineLogDummySubTransform
ReducedDimensionAffineLogTransformBasePointer m_AffineLogDummySubTransform
Definition: elxAffineLogStackTransform.h:198
elastix::AffineLogStackTransform::SpacingType
FixedImageType::SpacingType SpacingType
Definition: elxAffineLogStackTransform.h:131
elastix::AffineLogStackTransform::ReducedDimensionContinuousIndexType
itk::ContinuousIndex< CoordRepType, ReducedSpaceDimension > ReducedDimensionContinuousIndexType
Definition: elxAffineLogStackTransform.h:134
elastix::AffineLogStackTransform::ReducedDimensionOriginType
ReducedDimensionImageType::PointType ReducedDimensionOriginType
Definition: elxAffineLogStackTransform.h:122
elastix::AffineLogStackTransform::AffineLogStackTransformPointer
AffineLogStackTransformType::Pointer AffineLogStackTransformPointer
Definition: elxAffineLogStackTransform.h:92
elastix::AffineLogStackTransform::InitializeAffineLogTransform
unsigned int InitializeAffineLogTransform()
elastix::AffineLogStackTransform::WriteToFile
virtual void WriteToFile(const ParametersType &param) const
itk::AdvancedTransform
Transform maps points, vectors and covariant vectors from an input space to an output space.
Definition: itkAdvancedTransform.h:87
elastix::AffineLogStackTransform::AffineLogStackTransformType
itk::StackTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SpaceDimension) > AffineLogStackTransformType
Definition: elxAffineLogStackTransform.h:91
elastix::AffineLogStackTransform::ConfigurationPointer
Superclass2::ConfigurationPointer ConfigurationPointer
Definition: elxAffineLogStackTransform.h:102
elastix::AffineLogStackTransform::ReducedDimensionPointType
ReducedDimensionImageType::PointType ReducedDimensionPointType
Definition: elxAffineLogStackTransform.h:117
elastix::TransformBase::ElastixPointer
Superclass::ElastixPointer ElastixPointer
Definition: elxTransformBase.h:145
elastix::AffineLogStackTransform::ContinuousIndexType
itk::ContinuousIndex< CoordRepType, SpaceDimension > ContinuousIndexType
Definition: elxAffineLogStackTransform.h:135
elastix::AffineLogStackTransform::CombinationTransformType
Superclass2::CombinationTransformType CombinationTransformType
Definition: elxAffineLogStackTransform.h:109
elastix::AffineLogStackTransform::m_NumberOfSubTransforms
unsigned int m_NumberOfSubTransforms
Definition: elxAffineLogStackTransform.h:201
elastix::AffineLogStackTransform::RegistrationPointer
Superclass2::RegistrationPointer RegistrationPointer
Definition: elxAffineLogStackTransform.h:104
elastix::AffineLogStackTransform::ElastixType
Superclass2::ElastixType ElastixType
Definition: elxAffineLogStackTransform.h:99
itk::StackTransform
Implements stack of transforms: one for every last dimension index.
Definition: itkStackTransform.h:42
elastix::AffineLogStackTransform::Self
AffineLogStackTransform Self
Definition: elxAffineLogStackTransform.h:50
elastix::AffineLogStackTransform::ReducedDimensionAffineLogTransformBaseType
itk::AffineLogTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(ReducedSpaceDimension) > ReducedDimensionAffineLogTransformBaseType
Definition: elxAffineLogStackTransform.h:81
itk::AffineLogTransform
Definition: itkAffineLogTransform.h:35
elxIncludes.h
itk::AdvancedCombinationTransform::NumberOfParametersType
Superclass::NumberOfParametersType NumberOfParametersType
Definition: itkAdvancedCombinationTransform.h:82
elastix::AffineLogStackTransform::Superclass1
itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > Superclass1
Definition: elxAffineLogStackTransform.h:53
elastix::AffineLogStackTransform::DirectionType
FixedImageType::DirectionType DirectionType
Definition: elxAffineLogStackTransform.h:133
elastix::AffineLogStackTransform::ReducedDimensionOutputVectorType
ReducedDimensionAffineLogTransformBaseType::OutputVectorType ReducedDimensionOutputVectorType
Definition: elxAffineLogStackTransform.h:84
elastix::AffineLogStackTransform::ReducedDimensionRegionType
itk::ImageRegion< itkGetStaticConstMacro(ReducedSpaceDimension) > ReducedDimensionRegionType
Definition: elxAffineLogStackTransform.h:116
elastix::AffineLogStackTransform::ReducedDimensionAffineLogTransformBasePointer
ReducedDimensionAffineLogTransformBaseType::Pointer ReducedDimensionAffineLogTransformBasePointer
Definition: elxAffineLogStackTransform.h:82
elastix::AffineLogStackTransform::AffineLogStackTransform
AffineLogStackTransform(const Self &)
elastix::AffineLogStackTransform::ReducedDimensionDirectionType
ReducedDimensionImageType::DirectionType ReducedDimensionDirectionType
Definition: elxAffineLogStackTransform.h:121
elastix::AffineLogStackTransform::Superclass2
elx::TransformBase< TElastix > Superclass2
Definition: elxAffineLogStackTransform.h:54
elastix::AffineLogStackTransform::InputPointType
AffineLogTransformType::InputPointType InputPointType
Definition: elxAffineLogStackTransform.h:77
elastix::TransformBase::ConfigurationType
Superclass::ConfigurationType ConfigurationType
Definition: elxTransformBase.h:146
elastix::TransformBase::ScalesType
OptimizerType::ScalesType ScalesType
Definition: elxTransformBase.h:204
elastix::AffineLogStackTransform::ReducedDimensionInputPointType
ReducedDimensionAffineLogTransformBaseType::InputPointType ReducedDimensionInputPointType
Definition: elxAffineLogStackTransform.h:85
elastix::AffineLogStackTransform::RegistrationType
Superclass2::RegistrationType RegistrationType
Definition: elxAffineLogStackTransform.h:103
elastix::TransformBase::ConfigurationPointer
Superclass::ConfigurationPointer ConfigurationPointer
Definition: elxTransformBase.h:147
itk::AffineLogTransform::InputPointType
Superclass::InputPointType InputPointType
Definition: itkAffineLogTransform.h:66
elastix::AffineLogStackTransform::Pointer
itk::SmartPointer< Self > Pointer
Definition: elxAffineLogStackTransform.h:55
elastix::AffineLogStackTransform::BeforeRegistration
virtual void BeforeRegistration(void)
elastix::AffineLogStackTransform::ReducedDimensionIndexType
ReducedDimensionRegionType::IndexType ReducedDimensionIndexType
Definition: elxAffineLogStackTransform.h:119
elastix::AffineLogStackTransform::elxClassNameMacro
elxClassNameMacro("AffineLogStackTransform")
elastix::AffineLogStackTransform::CoordRepType
Superclass2::CoordRepType CoordRepType
Definition: elxAffineLogStackTransform.h:105
elastix::TransformBase
This class is the elastix base class for all Transforms.
Definition: elxTransformBase.h:133
elastix::AffineLogStackTransform::ElastixPointer
Superclass2::ElastixPointer ElastixPointer
Definition: elxAffineLogStackTransform.h:100
elastix::AffineLogStackTransform::m_AffineLogStackTransform
AffineLogStackTransformPointer m_AffineLogStackTransform
Definition: elxAffineLogStackTransform.h:195
elastix
Definition: elxFixedGenericPyramid.h:25
elastix::AffineLogStackTransform
An affine log transform based on the itkStackTransform.
Definition: elxAffineLogStackTransform.h:46
elastix::AffineLogStackTransform::InitializeTransform
virtual void InitializeTransform(void)
elastix::AffineLogStackTransform::SizeType
FixedImageType::SizeType SizeType
Definition: elxAffineLogStackTransform.h:129
elastix::AffineLogStackTransform::NumberOfParametersType
Superclass1::NumberOfParametersType NumberOfParametersType
Definition: elxAffineLogStackTransform.h:96
elastix::TransformBase::RegistrationType
Superclass::RegistrationType RegistrationType
Definition: elxTransformBase.h:152


Generated on OURCE_DATE_EPOCH for elastix by doxygen 1.8.18 elastix logo