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elxAffineLogTransform.h
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1 /*=========================================================================
2  *
3  * Copyright UMC Utrecht and contributors
4  *
5  * Licensed under the Apache License, Version 2.0 (the "License");
6  * you may not use this file except in compliance with the License.
7  * You may obtain a copy of the License at
8  *
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10  *
11  * Unless required by applicable law or agreed to in writing, software
12  * distributed under the License is distributed on an "AS IS" BASIS,
13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the License for the specific language governing permissions and
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16  *
17  *=========================================================================*/
18 #ifndef _ELXAFFINELOGTRANSFORM_H_
19 #define _ELXAFFINELOGTRANSFORM_H_
20 
22 #include "itkAffineLogTransform.h"
23 #include "itkCenteredTransformInitializer.h"
24 #include "elxIncludes.h"
25 
26 namespace elastix
27 {
28 
42 template< class TElastix >
45  typename elx::TransformBase< TElastix >::CoordRepType,
46  elx::TransformBase< TElastix >::FixedImageDimension >,
47  public elx::TransformBase< TElastix >
48 {
49 public:
50 
57  typedef itk::SmartPointer< Self > Pointer;
58  typedef itk::SmartPointer< const Self > ConstPointer;
59 
65 
67  itkNewMacro( Self );
68 
71 
76  elxClassNameMacro( "AffineLogTransform" );
77 
79  itkStaticConstMacro( SpaceDimension, unsigned int, Superclass2::FixedImageDimension );
80 
86 
95 
98 
111 
113  typedef typename FixedImageType::IndexType IndexType;
114  typedef typename IndexType::IndexValueType IndexValueType;
115  typedef typename FixedImageType::SizeType SizeType;
116  typedef typename FixedImageType::PointType PointType;
117  typedef typename FixedImageType::SpacingType SpacingType;
118  typedef typename FixedImageType::RegionType RegionType;
119  typedef typename FixedImageType::DirectionType DirectionType;
120 
121  typedef itk::CenteredTransformInitializer<
123  typedef typename TransformInitializerType::Pointer TransformInitializerPointer;
124 
127 
132  virtual void BeforeRegistration( void );
133 
149  virtual void InitializeTransform( void );
150 
158  virtual void SetScales( void );
159 
164  virtual void ReadFromFile( void );
165 
169  virtual void WriteToFile( const ParametersType & param ) const;
170 
171 protected:
172 
175 
178 
181  virtual bool ReadCenterOfRotationPoint( InputPointType & rotationPoint ) const;
182 
183 private:
184 
186  AffineLogTransformElastix( const Self & ); // purposely not implemented
188  void operator=( const Self & ); // purposely not implemented
189 
191 
192 };
193 
194 } // end namespace elastix
195 
196 #endif // ELXAFFINELOGTRANSFORM_H
197 
198 #ifndef ITK_MANUAL_INSTANTIATION
199 #include "elxAffineLogTransform.hxx"
200 #endif
itk::AdvancedCombinationTransform::JacobianType
Superclass::JacobianType JacobianType
Definition: itkAdvancedCombinationTransform.h:84
elastix::AffineLogTransformElastix::InputCovariantVectorType
Superclass1::InputCovariantVectorType InputCovariantVectorType
Definition: elxAffineLogTransform.h:91
elastix::AffineLogTransformElastix::IndexType
FixedImageType::IndexType IndexType
Definition: elxAffineLogTransform.h:113
itk::AdvancedCombinationTransform::OutputCovariantVectorType
Superclass::OutputCovariantVectorType OutputCovariantVectorType
Definition: itkAdvancedCombinationTransform.h:88
elastix::AffineLogTransformElastix::ScalarType
Superclass1::ScalarType ScalarType
Definition: elxAffineLogTransform.h:82
elastix::TransformBase::FixedImageType
ElastixType::FixedImageType FixedImageType
Definition: elxTransformBase.h:157
SmartPointer< Self >
elastix::AffineLogTransformElastix::AffineLogTransformPointer
AffineLogTransformType::Pointer AffineLogTransformPointer
Definition: elxAffineLogTransform.h:96
elastix::AffineLogTransformElastix::Pointer
itk::SmartPointer< Self > Pointer
Definition: elxAffineLogTransform.h:57
elastix::AffineLogTransformElastix
This transform is an affine transformation, with a different parametrisation than the usual one.
Definition: elxAffineLogTransform.h:48
elastix::TransformBase::CoordRepType
ElastixType::CoordRepType CoordRepType
Definition: elxTransformBase.h:156
elastix::AffineLogTransformElastix::SizeType
FixedImageType::SizeType SizeType
Definition: elxAffineLogTransform.h:115
elastix::TransformBase::RegistrationPointer
Superclass::RegistrationPointer RegistrationPointer
Definition: elxTransformBase.h:153
itkAdvancedCombinationTransform.h
elastix::AffineLogTransformElastix::operator=
void operator=(const Self &)
elastix::AffineLogTransformElastix::ElastixType
Superclass2::ElastixType ElastixType
Definition: elxAffineLogTransform.h:100
elastix::AffineLogTransformElastix::InputVectorType
Superclass1::InputVectorType InputVectorType
Definition: elxAffineLogTransform.h:89
elastix::AffineLogTransformElastix::BeforeRegistration
virtual void BeforeRegistration(void)
elastix::AffineLogTransformElastix::elxClassNameMacro
elxClassNameMacro("AffineLogTransform")
itk::AdvancedCombinationTransform::OutputVectorType
Superclass::OutputVectorType OutputVectorType
Definition: itkAdvancedCombinationTransform.h:86
itk::AdvancedCombinationTransform::ParametersType
Superclass::ParametersType ParametersType
Definition: itkAdvancedCombinationTransform.h:79
itk::AdvancedCombinationTransform
This class combines two transforms: an 'initial transform' with a 'current transform'.
Definition: itkAdvancedCombinationTransform.h:58
elastix::AffineLogTransformElastix::DirectionType
FixedImageType::DirectionType DirectionType
Definition: elxAffineLogTransform.h:119
elastix::AffineLogTransformElastix::OutputCovariantVectorType
Superclass1::OutputCovariantVectorType OutputCovariantVectorType
Definition: elxAffineLogTransform.h:92
elastix::AffineLogTransformElastix::MovingImageType
Superclass2::MovingImageType MovingImageType
Definition: elxAffineLogTransform.h:108
elastix::TransformBase::MovingImageType
ElastixType::MovingImageType MovingImageType
Definition: elxTransformBase.h:158
itk::AdvancedCombinationTransform::ScalarType
Superclass::ScalarType ScalarType
Definition: itkAdvancedCombinationTransform.h:78
elastix::AffineLogTransformElastix::m_AffineLogTransform
AffineLogTransformPointer m_AffineLogTransform
Definition: elxAffineLogTransform.h:190
elastix::TransformBase::ElastixType
Superclass::ElastixType ElastixType
Definition: elxTransformBase.h:141
elastix::AffineLogTransformElastix::RegistrationPointer
Superclass2::RegistrationPointer RegistrationPointer
Definition: elxAffineLogTransform.h:105
itk::AdvancedCombinationTransform::OutputPointType
Superclass::OutputPointType OutputPointType
Definition: itkAdvancedCombinationTransform.h:92
elastix::AffineLogTransformElastix::~AffineLogTransformElastix
virtual ~AffineLogTransformElastix()
Definition: elxAffineLogTransform.h:177
elastix::AffineLogTransformElastix::TransformInitializerType
itk::CenteredTransformInitializer< AffineLogTransformType, FixedImageType, MovingImageType > TransformInitializerType
Definition: elxAffineLogTransform.h:122
itk::AdvancedTransform
Transform maps points, vectors and covariant vectors from an input space to an output space.
Definition: itkAdvancedTransform.h:87
elastix::AffineLogTransformElastix::ParametersType
Superclass1::ParametersType ParametersType
Definition: elxAffineLogTransform.h:83
itk::AffineLogTransform::OffsetType
Superclass::OffsetType OffsetType
Definition: itkAffineLogTransform.h:72
elastix::AffineLogTransformElastix::TransformInitializerPointer
TransformInitializerType::Pointer TransformInitializerPointer
Definition: elxAffineLogTransform.h:123
elastix::AffineLogTransformElastix::WriteToFile
virtual void WriteToFile(const ParametersType &param) const
elastix::AffineLogTransformElastix::itkStaticConstMacro
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
elastix::AffineLogTransformElastix::IndexValueType
IndexType::IndexValueType IndexValueType
Definition: elxAffineLogTransform.h:114
elastix::TransformBase::ElastixPointer
Superclass::ElastixPointer ElastixPointer
Definition: elxTransformBase.h:145
elastix::AffineLogTransformElastix::CombinationTransformType
Superclass2::CombinationTransformType CombinationTransformType
Definition: elxAffineLogTransform.h:110
itk::AdvancedCombinationTransform::OutputVnlVectorType
Superclass::OutputVnlVectorType OutputVnlVectorType
Definition: itkAdvancedCombinationTransform.h:90
itkAffineLogTransform.h
itk::AdvancedCombinationTransform::InputVectorType
Superclass::InputVectorType InputVectorType
Definition: itkAdvancedCombinationTransform.h:85
elastix::AffineLogTransformElastix::ReadFromFile
virtual void ReadFromFile(void)
elastix::AffineLogTransformElastix::ITKBaseType
Superclass2::ITKBaseType ITKBaseType
Definition: elxAffineLogTransform.h:109
elastix::AffineLogTransformElastix::PointType
FixedImageType::PointType PointType
Definition: elxAffineLogTransform.h:116
elastix::AffineLogTransformElastix::NumberOfParametersType
Superclass1::NumberOfParametersType NumberOfParametersType
Definition: elxAffineLogTransform.h:84
elastix::AffineLogTransformElastix::Superclass2
elx::TransformBase< TElastix > Superclass2
Definition: elxAffineLogTransform.h:56
itk::AffineLogTransform
Definition: itkAffineLogTransform.h:35
elastix::AffineLogTransformElastix::RegistrationType
Superclass2::RegistrationType RegistrationType
Definition: elxAffineLogTransform.h:104
elxIncludes.h
elastix::AffineLogTransformElastix::AffineLogTransformElastix
AffineLogTransformElastix(const Self &)
itk::AdvancedCombinationTransform::InputVnlVectorType
Superclass::InputVnlVectorType InputVnlVectorType
Definition: itkAdvancedCombinationTransform.h:89
itk::AdvancedCombinationTransform::NumberOfParametersType
Superclass::NumberOfParametersType NumberOfParametersType
Definition: itkAdvancedCombinationTransform.h:82
elastix::AffineLogTransformElastix::ElastixPointer
Superclass2::ElastixPointer ElastixPointer
Definition: elxAffineLogTransform.h:101
elastix::AffineLogTransformElastix::ConfigurationType
Superclass2::ConfigurationType ConfigurationType
Definition: elxAffineLogTransform.h:102
elastix::AffineLogTransformElastix::ScalesType
Superclass2::ScalesType ScalesType
Definition: elxAffineLogTransform.h:126
elastix::AffineLogTransformElastix::OutputVnlVectorType
Superclass1::OutputVnlVectorType OutputVnlVectorType
Definition: elxAffineLogTransform.h:94
elastix::AffineLogTransformElastix::Superclass1
itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > Superclass1
Definition: elxAffineLogTransform.h:55
elastix::AffineLogTransformElastix::InputVnlVectorType
Superclass1::InputVnlVectorType InputVnlVectorType
Definition: elxAffineLogTransform.h:93
elastix::AffineLogTransformElastix::AffineLogTransformType
itk::AffineLogTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > AffineLogTransformType
Definition: elxAffineLogTransform.h:64
elastix::AffineLogTransformElastix::InputPointType
Superclass1::InputPointType InputPointType
Definition: elxAffineLogTransform.h:87
itk::AdvancedCombinationTransform::InputPointType
Superclass::InputPointType InputPointType
Definition: itkAdvancedCombinationTransform.h:91
elastix::AffineLogTransformElastix::SpacingType
FixedImageType::SpacingType SpacingType
Definition: elxAffineLogTransform.h:117
elastix::TransformBase::ConfigurationType
Superclass::ConfigurationType ConfigurationType
Definition: elxTransformBase.h:146
elastix::AffineLogTransformElastix::FixedImageType
Superclass2::FixedImageType FixedImageType
Definition: elxAffineLogTransform.h:107
elastix::AffineLogTransformElastix::ReadCenterOfRotationPoint
virtual bool ReadCenterOfRotationPoint(InputPointType &rotationPoint) const
elastix::AffineLogTransformElastix::InitializeTransform
virtual void InitializeTransform(void)
elastix::TransformBase::ScalesType
OptimizerType::ScalesType ScalesType
Definition: elxTransformBase.h:204
elastix::AffineLogTransformElastix::ConfigurationPointer
Superclass2::ConfigurationPointer ConfigurationPointer
Definition: elxAffineLogTransform.h:103
elastix::AffineLogTransformElastix::ConstPointer
itk::SmartPointer< const Self > ConstPointer
Definition: elxAffineLogTransform.h:58
itk::AdvancedCombinationTransform::InputCovariantVectorType
Superclass::InputCovariantVectorType InputCovariantVectorType
Definition: itkAdvancedCombinationTransform.h:87
elastix::AffineLogTransformElastix::Self
AffineLogTransformElastix Self
Definition: elxAffineLogTransform.h:52
elastix::TransformBase::ConfigurationPointer
Superclass::ConfigurationPointer ConfigurationPointer
Definition: elxTransformBase.h:147
elastix::AffineLogTransformElastix::RegionType
FixedImageType::RegionType RegionType
Definition: elxAffineLogTransform.h:118
elastix::AffineLogTransformElastix::CoordRepType
Superclass2::CoordRepType CoordRepType
Definition: elxAffineLogTransform.h:106
elastix::TransformBase
This class is the elastix base class for all Transforms.
Definition: elxTransformBase.h:133
elastix::AffineLogTransformElastix::OutputVectorType
Superclass1::OutputVectorType OutputVectorType
Definition: elxAffineLogTransform.h:90
elastix
Definition: elxFixedGenericPyramid.h:25
elastix::AffineLogTransformElastix::SetScales
virtual void SetScales(void)
elastix::AffineLogTransformElastix::OutputPointType
Superclass1::OutputPointType OutputPointType
Definition: elxAffineLogTransform.h:88
elastix::AffineLogTransformElastix::OffsetType
AffineLogTransformType::OffsetType OffsetType
Definition: elxAffineLogTransform.h:97
elastix::AffineLogTransformElastix::JacobianType
Superclass1::JacobianType JacobianType
Definition: elxAffineLogTransform.h:85
elastix::AffineLogTransformElastix::AffineLogTransformElastix
AffineLogTransformElastix()
elastix::TransformBase::RegistrationType
Superclass::RegistrationType RegistrationType
Definition: elxTransformBase.h:152


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