Package picard.sam.SamErrorMetric
Class ReadBaseStratification.ConsensusStratifier
- java.lang.Object
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- picard.sam.SamErrorMetric.ReadBaseStratification.ConsensusStratifier
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- All Implemented Interfaces:
ReadBaseStratification.RecordAndOffsetStratifier<ReadBaseStratification.Consensus>
- Enclosing class:
- ReadBaseStratification
public static class ReadBaseStratification.ConsensusStratifier extends Object
Stratify by tags used during duplex and single index consensus calling.
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Constructor Summary
Constructors Constructor Description ConsensusStratifier()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getSuffix()
ReadBaseStratification.Consensus
stratify(htsjdk.samtools.SAMRecord sam)
T
stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
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Method Detail
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stratify
public ReadBaseStratification.Consensus stratify(htsjdk.samtools.SAMRecord sam)
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getSuffix
public String getSuffix()
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stratify
public T stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
- Specified by:
stratify
in interfaceReadBaseStratification.RecordAndOffsetStratifier<T extends Comparable<T>>
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