Class Hierarchy
- java.lang.Object
- picard.analysis.AbstractWgsMetricsCollector<T>
- picard.analysis.CollectWgsMetrics.WgsMetricsCollector
- picard.analysis.FastWgsMetricsCollector
- picard.analysis.AdapterUtility
- picard.analysis.ChimeraUtil
- picard.analysis.CollectAlignmentSummaryMetrics.CollectAlignmentRefArgCollection (implements picard.cmdline.argumentcollections.ReferenceArgumentCollection)
- picard.analysis.CollectQualityYieldMetrics.QualityYieldMetricsCollector
- picard.analysis.CollectRrbsMetrics.CollectRrbsMetricsReferenceArgumentCollection (implements picard.cmdline.argumentcollections.ReferenceArgumentCollection)
- picard.analysis.CollectWgsMetrics.CollectWgsMetricsIntervalArgumentCollection (implements picard.cmdline.argumentcollections.IntervalArgumentCollection)
- picard.cmdline.CommandLineProgram
- picard.analysis.CollectJumpingLibraryMetrics
- picard.analysis.CollectMultipleMetrics
- picard.analysis.CollectOxoGMetrics
- picard.analysis.CollectRrbsMetrics
- picard.analysis.CollectWgsMetrics
- picard.analysis.CollectRawWgsMetrics
- picard.analysis.CollectWgsMetricsWithNonZeroCoverage
- picard.analysis.CompareMetrics
- picard.analysis.SinglePassSamProgram
- picard.analysis.CollectAlignmentSummaryMetrics
- picard.analysis.CollectBaseDistributionByCycle
- picard.analysis.CollectGcBiasMetrics
- picard.analysis.CollectInsertSizeMetrics
- picard.analysis.CollectQualityYieldMetrics
- picard.analysis.CollectRnaSeqMetrics
- picard.analysis.MeanQualityByCycle
- picard.analysis.QualityScoreDistribution
- picard.analysis.CounterManager
- picard.analysis.CounterManager.Counter
- picard.analysis.GcBiasMetricsCollector.PerUnitGcBiasMetricsCollector (implements picard.metrics.PerUnitMetricCollector<BEAN,HKEY,ARGTYPE>)
- picard.analysis.GcBiasUtils
- htsjdk.samtools.metrics.MetricBase
- picard.analysis.BaseDistributionByCycleMetrics
- picard.analysis.CollectOxoGMetrics.CpcgMetrics
- picard.analysis.CollectQualityYieldMetrics.QualityYieldMetrics
- picard.analysis.FingerprintingDetailMetrics
- picard.analysis.FingerprintingSummaryMetrics
- picard.analysis.JumpingLibraryMetrics
- picard.analysis.MergeableMetricBase
- picard.analysis.CollectWgsMetrics.WgsMetrics
- picard.analysis.CollectRawWgsMetrics.RawWgsMetrics
- picard.analysis.CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverage
- picard.analysis.CollectWgsMetrics.WgsMetrics
- picard.metrics.MultilevelMetrics
- picard.analysis.AlignmentSummaryMetrics
- picard.analysis.GcBiasDetailMetrics
- picard.analysis.GcBiasSummaryMetrics
- picard.analysis.InsertSizeMetrics
- picard.analysis.RnaSeqMetrics
- picard.analysis.RrbsCpgDetailMetrics
- picard.analysis.RrbsSummaryMetrics
- picard.analysis.TheoreticalSensitivityMetrics
- picard.metrics.MultiLevelCollector<METRIC_TYPE,Histogram_KEY,ARGTYPE>
- picard.analysis.GcBiasMetricsCollector
- picard.metrics.SAMRecordAndReferenceMultiLevelCollector<BEAN,HKEY>
- picard.analysis.AlignmentSummaryMetricsCollector
- picard.analysis.RrbsMetricsCollector
- picard.analysis.TheoreticalSensitivity
- picard.analysis.TheoreticalSensitivity.RouletteWheel
- picard.analysis.WgsMetricsProcessorImpl<T> (implements picard.analysis.WgsMetricsProcessor)
- picard.analysis.AbstractWgsMetricsCollector<T>
Interface Hierarchy
- picard.analysis.CollectMultipleMetrics.ProgramInterface
- picard.analysis.WgsMetricsProcessor
Annotation Type Hierarchy
- picard.analysis.MergeableMetricBase.MergeByAdding (implements java.lang.annotation.Annotation)
- picard.analysis.MergeableMetricBase.MergeByAssertEquals (implements java.lang.annotation.Annotation)
- picard.analysis.MergeableMetricBase.MergingIsManual (implements java.lang.annotation.Annotation)
- picard.analysis.MergeableMetricBase.NoMergingIsDerived (implements java.lang.annotation.Annotation)
- picard.analysis.MergeableMetricBase.NoMergingKeepsValue (implements java.lang.annotation.Annotation)
Enum Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
- picard.analysis.AlignmentSummaryMetrics.Category
- picard.analysis.CollectMultipleMetrics.Program (implements picard.analysis.CollectMultipleMetrics.ProgramInterface)
- picard.analysis.CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverage.Category
- picard.analysis.MetricAccumulationLevel
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)