Class RrbsCpgDetailMetrics


  • public final class RrbsCpgDetailMetrics
    extends MultilevelMetrics
    Holds information about CpG sites encountered for RRBS processing QC
    • Field Detail

      • SEQUENCE_NAME

        public String SEQUENCE_NAME
        Sequence the CpG is seen in
      • POSITION

        public Integer POSITION
        Position within the sequence of the CpG site
      • TOTAL_SITES

        public Integer TOTAL_SITES
        Number of times this CpG site was encountered
      • CONVERTED_SITES

        public Integer CONVERTED_SITES
        Number of times this CpG site was converted (TG for + strand, CA for - strand)
      • PCT_CONVERTED

        public Double PCT_CONVERTED
        CpG CONVERTED_BASES / CpG TOTAL_BASES (fraction)
    • Constructor Detail

      • RrbsCpgDetailMetrics

        public RrbsCpgDetailMetrics()