Package picard.fastq
Class Casava18ReadNameEncoder
- java.lang.Object
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- picard.fastq.Casava18ReadNameEncoder
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- All Implemented Interfaces:
ReadNameEncoder
public class Casava18ReadNameEncoder extends Object implements ReadNameEncoder
A read name encoder conforming to the standard described by Illumina Casava 1.8.- See Also:
- Casava 1.8 update
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Constructor Summary
Constructors Constructor Description Casava18ReadNameEncoder(String instrumentName, String runId, String flowcellId)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
generateReadName(ClusterData cluster, Integer pairNumber)
Generates a read name string for the provided cluster.
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Method Detail
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generateReadName
public String generateReadName(ClusterData cluster, Integer pairNumber)
Description copied from interface:ReadNameEncoder
Generates a read name string for the provided cluster.- Specified by:
generateReadName
in interfaceReadNameEncoder
- Parameters:
cluster
- The cluster whose reads are having its name generatedpairNumber
- 1 if this is the first of the pair, 2 if it is the second, or null if this not a paired read.- Returns:
- The read name
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